PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G115000.1
Common NameB456_013G115000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 274aa    MW: 30280.5 Da    PI: 6.5169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G115000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173887255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+       ++ r +lg+f taeeAa+a+++a+  l+g
  Gorai.013G115000.1 38 KFVGVRQRP-SGRWVAEIKNtT----HKIRMWLGTFETAEEAARAYDEAACLLHG 87
                        799******.7******99922....34**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3438101IPR001471AP2/ERF domain
PROSITE profilePS5103219.3883895IPR001471AP2/ERF domain
PfamPF008477.1E-133887IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-193895IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-273895IPR001471AP2/ERF domain
CDDcd000187.82E-313894No hitNo description
PRINTSPR003679.2E-83950IPR001471AP2/ERF domain
PRINTSPR003679.2E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEIQSQQQIQ LKLQPKSSNP SVSKGSKFKG RNNNKVNKFV GVRQRPSGRW VAEIKNTTHK  60
IRMWLGTFET AEEAARAYDE AACLLHGSNT RTNFITQAPS DSPLAYRIRN LLNSKKGGEQ  120
QHHQSVVASA APSTSATISF SPMPSPSTSS SGCSSNGGLS NGNLSVSGTV QDTQLFDDAY  180
RPDMRSWRRE SGFDTDFTYT TSELGFDRFL YTQETTGLPE ETGSELTEFQ SMKVERQISA  240
SLHAMNGVEE YMETVHDSSE NLWDLPPLCS LLY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462256.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0D2W5290.0A0A0D2W529_G
STRINGVIT_08s0007g07250.t015e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16007712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-27related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]